Resistance and robustness of the global coral-symbiont network

Williams and Patterson, Ecology 2020

Fig. 1 A) Visualization of the global coral-symbiont network. Host nodes are in blue and symbiont nodes are in yellow. Size corresponds to degree.

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Additional Supplemental Material

Code and data files needed to execute the code are re-organized and provided in this GitHub Repository. See the R and Python sub-folders.

R

All R code was written in R version 3.5.1 using R studio.

For visualizing the model results, statistics described in Appendix S2, and code for symbiont node tolerances: StatisticsAndVisualization_R35.rmd – Rmarkdown

Python

All code for the network bleaching model, null network models, and robustness removal models was written in Python 2.7.16 using a jupyter notebook.

For simulating the bleaching model (Eq. 1), calculating resistance, degree distribution fitting, the host-specific network, and the generalized network: BleachingModel_Resistance_Py27.ipynb – Jupyter notebook

For the removal models and robustness analyses: RemovalModels_Robustness_Py27.ipynb – Jupyter notebook